TF specific parameters for logistic regression in sevenC

sevenC was trained on 124 TF ChIP-seq data sets from ENCODE. Specific parameters are provided in this data set.

TFspecificModels

Format

A data.frame with 868 rows and 7 columns.

TF

TF name used in ChIP-seq experiment.

file_accession

File accession ID from ENCODE project

term

Model term name. See modelBest10Avg for more detials.

estimate_mean

Mean parameter estimate in 10-fold cross-validation

estimate_median

Median parameter estimate in 10-fold cross-validation

estimate_sd

Standard deviation of parameter estimate in 10-fold cross-validation

See also

modelBest10Avg and cutoffByTF